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maxquant:andromeda:configuration:protdatabases

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maxquant:andromeda:configuration:protdatabases [2015/11/23 14:38]
127.0.0.1 external edit
maxquant:andromeda:configuration:protdatabases [2016/09/12 14:00] (current)
art [Adding a new database]
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 Then you just have to fill in the form by defining the fasta file that should be used, the parsing rule that should be applied to retrieve the identifiers,​ the source of the fasta file, the taxonomy and the organism name. To define the parsing rule regular expressions are used. A regular expression is a sequence of characters that forms a search pattern with a special syntax. A good general introduction can be found, as always, on [[http://​en.wikipedia.org/​wiki/​Regular_expression|Wikipedia]]. If you already know generally how regular expressions work, you may only need to glance at a [[http://​msdn.microsoft.com/​en-us/​library/​az24scfc.aspx|Quick Reference]] or at an even quicker [[http://​www.mikesdotnetting.com/​Article/​46/​CSharp-Regular-Expressions-Cheat-Sheet|Cheat Sheet]]. Also you don't have to know the taxonomy of your organism, just type in the name and use the arrows in the taxonomy line and MaxQuant will complete the form. Then you just have to fill in the form by defining the fasta file that should be used, the parsing rule that should be applied to retrieve the identifiers,​ the source of the fasta file, the taxonomy and the organism name. To define the parsing rule regular expressions are used. A regular expression is a sequence of characters that forms a search pattern with a special syntax. A good general introduction can be found, as always, on [[http://​en.wikipedia.org/​wiki/​Regular_expression|Wikipedia]]. If you already know generally how regular expressions work, you may only need to glance at a [[http://​msdn.microsoft.com/​en-us/​library/​az24scfc.aspx|Quick Reference]] or at an even quicker [[http://​www.mikesdotnetting.com/​Article/​46/​CSharp-Regular-Expressions-Cheat-Sheet|Cheat Sheet]]. Also you don't have to know the taxonomy of your organism, just type in the name and use the arrows in the taxonomy line and MaxQuant will complete the form.
  
-Don't forget to click the "​Modify table" button when your done to transfer the changes you made in the form to the table on the left. And to save the table you have to click the "Save changes"​ button. To have the added sequence database available in MaxQuant you have to open a new MaxQuant window. ​+Don't forget to click the "​Modify table" button when you'​re ​done to transfer the changes you made in the form to the table on the left. And to save the table you have to click the "Save changes"​ button. To have the added sequence database available in MaxQuant you have to open a new MaxQuant window. ​
  
 {{ :​maxquant:​andromeda:​configuration:​configprotseq-04-add_filled_in_form-edited.png?​direct |}} {{ :​maxquant:​andromeda:​configuration:​configprotseq-04-add_filled_in_form-edited.png?​direct |}}
maxquant/andromeda/configuration/protdatabases.txt ยท Last modified: 2016/09/12 14:00 by art