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maxquant:common:download_and_installation [2018/01/22 14:59]
sinitcyn
maxquant:common:download_and_installation [2019/02/26 15:17] (current)
yeroslaviz [Download and Installation Guide]
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-{{page>common:download_and_installation}} +~~NOCACHE~~ 
-<!--{{page>common:​net_framework_4.5}} + 
-{{page>common:​msfilereader}} +====== Download and Installation Guide ====== 
--->+ 
 +===== Download ===== 
 +Downloading and using the software is free of charge.  
 + 
 +Simply download from [[https://​maxquant.org/​|here]] and unpack the compressed file //​MaxQuant.zip//​. 
 + 
 +===== Running ===== 
 +Please choose your operating system to view how to run MaxQuant. 
 +-->MaxQuant on Windows# 
 +Supported operation system versions (64 bit is required) are Windows Vista, 7, 8, 10, Server 2008, 2012. 
 + 
 +  * **Install .NET Framework 4.7.2 or higher** \\ To find out whether you already have it, follow the instructions on [[http://​msdn.microsoft.com/​en-us/​library/​hh925568%28v=vs.110%29.aspx#​net_b|How to Determine Which .NET Framework Versions Are Installed]]. If you need to, you can download the software and get installation instructions at the [[http://​www.microsoft.com/​en-us/​download/​details.aspx?​id=30653|Microsoft Download Center]]. 
 +  * **Run MaxQuant GUI** 
 +Double click on //​MaxQuant.exe//​ in //​MaxQuant//​ folder and specify your RAW files, experimental design and fasta files. 
 +  *  **Start MaxQuant** 
 +Click on the //Start// button. 
 + 
 +<-- 
 + 
 +-->MaxQuant on Linux# 
 +We are supporting and testing MaxQuant on Ubuntu 16.04.3 or higher, but MaxQuant should also work on another distribution of Linux. \\ 
 +You may run MaxQuant using Graphical User Interface. In this case, you should install Mono and follow instructions for //MaxQuant on Windows// starting from second point. This tutorial is focused on running MaxQuant using command line. 
 + 
 +  * **Install Mono Framework ​5.4.1 or higher** \\  
 +To find out whether you already have it, type in the command line 
 +<code bash
 +mono --version 
 +</code> 
 +If you need to, you can download the software and get installation instructions at the [[http://​www.mono-project.com/​download/#​download-lin|Mono Download page]]. 
 +  * **Edit //​mqpar.xml//​ file** 
 +Currently we highly recommend to preconfigure the //​mqpar.xml//​ file in MaxQuant GUI. After transferring the file on Linux machine, do not forget to update file addresses accordingly. 
 +  * **Run MaxQuant** 
 +<code bash> 
 +mono MaxQuant/​bin/​MaxQuantCmd.exe mqpar.xml 
 +</​code>​ 
 +<-- 
 + 
 +===== Hardware requirements ===== 
 +  * Intel Pentium III/800 MHz or higher (or compatible) although one should probably not go below a dual core processor. 
 +  * 2 GB RAM minimum. 
 +  * 2 GB RAM per thread that is executed in parallel is required. 
 +  * There is no upper limit on the number of cores. Whatever you can fit into a shared memory machine will work as long as the disk performance scales up with it.
maxquant/common/download_and_installation.1516629572.txt.gz · Last modified: 2018/01/22 14:59 by sinitcyn