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maxquant:start [2017/12/04 15:45]
art [Documentation outline]
maxquant:start [2019/02/26 11:47]
yeroslaviz
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 ====== MaxQuant ====== ====== MaxQuant ======
  
-MaxQuant is a quantitative ​proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling techniques as well as label-free quantification are supported. MaxQuant is freely available and can be downloaded from this site. The download includes the search engine [[maxquant:​andromeda:​start]],​ which is integrated into MaxQuant as well as the [[maxquant:​viewer:​start]] application for inspection of raw data and identification and quantification results. For statistical analysis of MaxQuant output, we offer the [[Perseus:​start]] framework.+MaxQuant is a proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling techniques as well as label-free quantification are supported. MaxQuant is freely available and can be downloaded from this site. The download includes the search engine [[maxquant:​andromeda:​start]],​ which is integrated into MaxQuant as well as the [[maxquant:​viewer:​start]] application for inspection of raw data and identification and quantification results. For statistical analysis of MaxQuant output, we offer the [[Perseus:​start]] framework.
  
  
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 This documentation is organized as a wiki, so if you find anything that is wrong or hard to understand, in most cases you can fix it yourself. The wiki can be browsed by using the links below or by searching with the box in the upper right. Anyone is allowed to read the wiki, but to make changes you will have to register and login using the button in the upper right. If you are an **internal user at the MPI of Biochemistry**,​ you can get access to some restricted pages; contact the Cox group after you have registered. This documentation is organized as a wiki, so if you find anything that is wrong or hard to understand, in most cases you can fix it yourself. The wiki can be browsed by using the links below or by searching with the box in the upper right. Anyone is allowed to read the wiki, but to make changes you will have to register and login using the button in the upper right. If you are an **internal user at the MPI of Biochemistry**,​ you can get access to some restricted pages; contact the Cox group after you have registered.
  
-  * [[:maxquant:common:Download and installation]]+  * [[https://maxquant.org/|Download and installation]]
   * [[:​maxquant:​manual:​Beginner|First steps in MaxQuant]]   * [[:​maxquant:​manual:​Beginner|First steps in MaxQuant]]
   * [[:​maxquant:​viewer:​start]]   * [[:​maxquant:​viewer:​start]]
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 Tyanova, S., Temu, T., Carlson, A., Sinitcyn, P., Mann, M. and Cox, J., [[http://​onlinelibrary.wiley.com/​doi/​10.1002/​pmic.201400449/​abstract|Visualization of LC-MS/MS proteomics data in MaxQuant]], //​Proteomics//,​ 2015, 15, pp 1453–1456 Tyanova, S., Temu, T., Carlson, A., Sinitcyn, P., Mann, M. and Cox, J., [[http://​onlinelibrary.wiley.com/​doi/​10.1002/​pmic.201400449/​abstract|Visualization of LC-MS/MS proteomics data in MaxQuant]], //​Proteomics//,​ 2015, 15, pp 1453–1456
 +
 +Tyanova, S., Temu, T., and Cox, J., [[https://​www.nature.com/​articles/​nprot.2016.136|The MaxQuant computational platform for mass spectrometry-based shotgun proteomics]],​ //Nat Protocols//,​ 2016, 11, pp 2301–2319
 +\\ **Note that this paper explains how to run MaxQuant in detail.**
  
  
maxquant/start.txt · Last modified: 2019/02/26 12:04 by yeroslaviz