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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/19 14:39] 127.0.0.1 external edit |
perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/23 14:47] |
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- | {{page>perseus:noedit:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers}} | ||
- | <!-- This comment and the line above it must be preserved when editing this file! | ||
- | The recommended sections are these, but they may be changed on a case by case basis. | ||
- | ===== Detailed description ===== | ||
- | ===== Parameters ===== | ||
- | ===== Theoretical background ===== | ||
- | ===== Examples ===== | ||
- | Make changes only below this line! --> | ||
- | ===== Parameters ===== | ||
- | ==== Source ==== | ||
- | Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/conf/annotations/). The file should be the same that was used to add the annotations, also it can be selected from all files in Perseus-version/conf/annotations/. | ||
- | |||
- | ==== Identifiers ==== | ||
- | Selected text column containing the identifiers that should be matched back to UniProt identifiers (default: first text column in the matrix). | ||
- | |||
- | __Comment:__ Only text columns can matched back __not__ categorical ones, because there is no unique match. | ||
- | |||
- | ==== Identifier type ==== | ||
- | Selected type of the identifiers that will be mapped back (default: Gene name). | ||
- | The identifier type can be selected from a predefined list: | ||
- | * ENSG | ||
- | * ENSP | ||
- | * ENST | ||
- | * Flybase | ||
- | * Gene name | ||
- | * MGI | ||
- | * PDB | ||
- | * UniProt names | ||
- | * Wormbase | ||
- | * EC | ||
- | * eggNOG | ||
- | |||
- | ==== Parameter window ==== | ||
- | {{ :user:activities:matrixprocessing:annotcolumns:modifications-to_base_identifiers-edited.png?direct |Perseus pop-up window: Modifications -> To base identifiers}} |