perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers
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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/19 14:39] 127.0.0.1 external edit |
perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/23 14:47] |
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| - | <!-- This comment and the line above it must be preserved when editing this file! | ||
| - | The recommended sections are these, but they may be changed on a case by case basis. | ||
| - | ===== Detailed description ===== | ||
| - | ===== Parameters ===== | ||
| - | ===== Theoretical background ===== | ||
| - | ===== Examples ===== | ||
| - | Make changes only below this line! --> | ||
| - | ===== Parameters ===== | ||
| - | ==== Source ==== | ||
| - | Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/conf/annotations/). The file should be the same that was used to add the annotations, also it can be selected from all files in Perseus-version/conf/annotations/. | ||
| - | |||
| - | ==== Identifiers ==== | ||
| - | Selected text column containing the identifiers that should be matched back to UniProt identifiers (default: first text column in the matrix). | ||
| - | |||
| - | __Comment:__ Only text columns can matched back __not__ categorical ones, because there is no unique match. | ||
| - | |||
| - | ==== Identifier type ==== | ||
| - | Selected type of the identifiers that will be mapped back (default: Gene name). | ||
| - | The identifier type can be selected from a predefined list: | ||
| - | * ENSG | ||
| - | * ENSP | ||
| - | * ENST | ||
| - | * Flybase | ||
| - | * Gene name | ||
| - | * MGI | ||
| - | * PDB | ||
| - | * UniProt names | ||
| - | * Wormbase | ||
| - | * EC | ||
| - | * eggNOG | ||
| - | |||
| - | ==== Parameter window ==== | ||
| - | {{ :user:activities:matrixprocessing:annotcolumns:modifications-to_base_identifiers-edited.png?direct |Perseus pop-up window: Modifications -> To base identifiers}} | ||
perseus/user/activities/matrixprocessing/annotcolumns/backtobaseidentifiers.txt ยท Last modified: 2015/11/23 14:47 (external edit)
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