perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers
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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2014/07/08 18:26] 127.0.0.1 external edit |
perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/23 14:47] (current) |
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| - | ====== To base identifiers ====== | + | {{page>perseus:noedit:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers}} |
| - | + | <!-- This comment and the line above it must be preserved when editing this file! | |
| - | ===== General ===== | + | The recommended sections are these, but they may be changed on a case by case basis. |
| - | + | ===== Detailed description ===== | |
| - | * Type: Matrix Processing | + | |
| - | * Heading: Annot. columns | + | |
| - | + | ||
| - | + | ||
| - | ===== Description ===== | + | |
| - | + | ||
| - | This activity does the inverse of the 'Add annotation' activity. Any of the columns that can be created by the 'Add annotation' activity can be mapped back to the base identifiers (typically | + | |
| - | UniProt ids). | + | |
| ===== Parameters ===== | ===== Parameters ===== | ||
| - | |||
| - | |||
| - | |||
| ===== Theoretical background ===== | ===== Theoretical background ===== | ||
| + | ===== Examples ===== | ||
| + | Make changes only below this line! --> | ||
| + | ===== Parameters ===== | ||
| + | ==== Source ==== | ||
| + | Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/conf/annotations/). The file should be the same that was used to add the annotations, also it can be selected from all files in Perseus-version/conf/annotations/. | ||
| + | ==== Identifiers ==== | ||
| + | Selected text column containing the identifiers that should be matched back to UniProt identifiers (default: first text column in the matrix). | ||
| - | ===== Examples ===== | + | __Comment:__ Only text columns can matched back __not__ categorical ones, because there is no unique match. |
| + | ==== Identifier type ==== | ||
| + | Selected type of the identifiers that will be mapped back (default: Gene name). | ||
| + | The identifier type can be selected from a predefined list: | ||
| + | * ENSG | ||
| + | * ENSP | ||
| + | * ENST | ||
| + | * Flybase | ||
| + | * Gene name | ||
| + | * MGI | ||
| + | * PDB | ||
| + | * UniProt names | ||
| + | * Wormbase | ||
| + | * EC | ||
| + | * eggNOG | ||
| + | ==== Parameter window ==== | ||
| + | {{ perseus:user:activities:matrixprocessing:annotcolumns:modifications-to_base_identifiers-edited.png?direct |Perseus pop-up window: Modifications -> To base identifiers}} | ||
perseus/user/activities/matrixprocessing/annotcolumns/backtobaseidentifiers.1404836771.txt.gz · Last modified: 2015/11/23 14:43 (external edit)
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