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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers

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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2014/07/08 18:26]
127.0.0.1 external edit
perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/23 14:47] (current)
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-====== To base identifiers ====== +{{page>​perseus:noedit:​user:​activities:matrixprocessing:​annotcolumns:​backtobaseidentifiers}} 
- +<!-- This comment and the line above it must be preserved when editing this file! 
-===== General ===== +The recommended sections are these, but they may be changed on a case by case basis. 
- +===== Detailed description ​=====
-  * TypeMatrix Processing +
-  * HeadingAnnot. columns +
- +
- +
-===== Description ​===== +
- +
-This activity does the inverse of the 'Add annotation'​ activity. Any of the columns that can be created by the 'Add annotation'​ activity can be mapped back to the base identifiers (typically  +
-UniProt ids). +
 ===== Parameters ===== ===== Parameters =====
- 
- 
- 
 ===== Theoretical background ===== ===== Theoretical background =====
 +===== Examples =====
 +Make changes only below this line! -->
  
 +===== Parameters =====
 +==== Source ====
 +Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/​conf/​annotations/​). The file should be the same that was used to add the annotations,​ also it can be selected from all files in Perseus-version/​conf/​annotations/​. ​
  
 +==== Identifiers ====
 +Selected text column containing the identifiers that should be matched back to UniProt identifiers (default: first text column in the matrix).
  
-===== Examples ===== +__Comment:​__ Only text columns can matched back __not__ categorical ones, because there is no unique match.
  
 +==== Identifier type ====
 +Selected type of the identifiers that will be mapped back (default: Gene name).
 +The identifier type can be selected from a predefined list:
 +  * ENSG
 +  * ENSP
 +  * ENST
 +  * Flybase
 +  * Gene name
 +  * MGI
 +  * PDB
 +  * UniProt names
 +  * Wormbase
 +  * EC
 +  * eggNOG
  
 +==== Parameter window ====
 +{{ perseus:​user:​activities:​matrixprocessing:​annotcolumns:​modifications-to_base_identifiers-edited.png?​direct |Perseus pop-up window: Modifications -> To base identifiers}}
perseus/user/activities/matrixprocessing/annotcolumns/backtobaseidentifiers.1404836771.txt.gz · Last modified: 2015/11/23 14:43 (external edit)