perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers
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perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/07/20 09:41] temu [Source] |
perseus:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers [2015/11/23 14:47] (current) |
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| - | {{page>noedit:perseus:activities:matrixprocessing:annotcolumns:backtobaseidentifiers}} | + | {{page>perseus:noedit:user:activities:matrixprocessing:annotcolumns:backtobaseidentifiers}} |
| <!-- This comment and the line above it must be preserved when editing this file! | <!-- This comment and the line above it must be preserved when editing this file! | ||
| The recommended sections are these, but they may be changed on a case by case basis. | The recommended sections are these, but they may be changed on a case by case basis. | ||
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| ===== Parameters ===== | ===== Parameters ===== | ||
| ==== Source ==== | ==== Source ==== | ||
| - | Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/conf/annotations/). The file can be selected from all files in Perseus-version/conf/annotations/. | + | Specified path to the file containing the annotations that should be mapped back to the base identifiers (default: first file in Perseus-version/conf/annotations/). The file should be the same that was used to add the annotations, also it can be selected from all files in Perseus-version/conf/annotations/. |
| ==== Identifiers ==== | ==== Identifiers ==== | ||
| + | Selected text column containing the identifiers that should be matched back to UniProt identifiers (default: first text column in the matrix). | ||
| + | |||
| + | __Comment:__ Only text columns can matched back __not__ categorical ones, because there is no unique match. | ||
| ==== Identifier type ==== | ==== Identifier type ==== | ||
| + | Selected type of the identifiers that will be mapped back (default: Gene name). | ||
| + | The identifier type can be selected from a predefined list: | ||
| + | * ENSG | ||
| + | * ENSP | ||
| + | * ENST | ||
| + | * Flybase | ||
| + | * Gene name | ||
| + | * MGI | ||
| + | * PDB | ||
| + | * UniProt names | ||
| + | * Wormbase | ||
| + | * EC | ||
| + | * eggNOG | ||
| ==== Parameter window ==== | ==== Parameter window ==== | ||
| + | {{ perseus:user:activities:matrixprocessing:annotcolumns:modifications-to_base_identifiers-edited.png?direct |Perseus pop-up window: Modifications -> To base identifiers}} | ||
perseus/user/activities/matrixprocessing/annotcolumns/backtobaseidentifiers.1437378082.txt.gz · Last modified: 2015/11/23 14:43 (external edit)
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