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perseus:user:activities:matrixprocessing:modifications:addlinearmotifs

Add linear motifs

General

Brief description

Given a column containing the sequence window centered around modification sites, linear motifs are matched to these sequences and a potential kinase or binding partner is suggested. The motifs are defined in the File \'conf\\motifs.txt\'

Output: Same matrix with a categorical column added which contains the kinases or binding partners which are recognized based on the linear seqence motif.

Parameters

Sequence window

Selected text column that contains the sequence windows around the sites (default: first text column in the matrix).

Parameter window

Perseus pop-up window: Modifications -> Add linear motif

perseus/user/activities/matrixprocessing/modifications/addlinearmotifs.txt · Last modified: 2015/12/09 16:37 by temu