perseus:user:change_log

Change log

[1.6.1.0] - 2017-12-08

Added

Specify name for annotation row created from regular expression.
Cluster constraints added to hierarchical clustering
Volcano plot: Display group names in x-axis label [[Perseus-156](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-156)]
Session files are not overwritten with a corrupted file if saving session fails [[Perseus-154](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-154)].
Label column in volcano/scatter plots are now 'Gene Name' by default. Any manual selection will be saved with the session [[Perseus-155](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-155)].
Readded 'Annotation matrix' activity [[Perseus-165](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-165)].
'Raw upload' now supports also space-separated files.

Fixed

Multi-scatter plot: remove dummy button from GUI. Do not limit correlation calculation to visible plots only. No more missing values in correlation column [[Perseus-150](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-150)].
Imputation matrix from not expanded in `Expand multi-numeric and text columns` leading to errors downstream [[Perseus-146](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-146)].
Hierarchical Clustering - Image export [[Perseus-144](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-144)].
Hierarchical clustering correctly handling duplicate rows in k-means pre-clustering: Fixed an error occurring when the total number of rows in the data was larger than k but the unique number of rows was less than k [[Perseus-164](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-164)].
Missing configuration files were re-added to the release. Activity headers will now be ordered as before.
GUI would crash after switching many times between analyses [[Perseus-182](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-182)].
Fix annotation row copying in 'Matching rows by name' which would lead to errors downstream [[Perseus-179](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-179)].
When using 'Add annotation' and 'Back to base identifiers' `mainAnnot*` is now again selected by default.

[1.6.0.7] - 2017-07-26

Fixed

Enabled saving of large sessions due to changes in the way annotation rows and columns are serialized
Fixed a bug in one-sided volcano plot, where processing would never finish.
Configuring scatter plot [Perseus-129].
Resize tables after loading session [Perseus-123].
Find dialog stays on top [Perseus-125].
Histogram: Change number of bins and select from imputation [Perseus-118].
Fix font-selection [Perseus-122].
Fix bug in annotation creation that made filtering rows crash [Perseus-132].

Added

Process text columns now includes an optional replacement string.
Report version number of .sps session file on failed load [Perseus-14].

Changed

Volcano Plot: Reordered parameters to be consistent with the interface of the 'Two sample test'. Group 1 is now on the right side of the plot. The x-axis label was adjusted accordingly.

[1.5.8.0] - 2017-03-13

Added

Winforms based GUI.

[1.5.6.0] - 2016-10-31

Fixed

Width adjustment - correct behaviour also on very small sample size due to change of definition of quantiles.

Added

Numeric venn diagram now also possible on numerical columns.
Replace missing from gaussion possible on numerical columns.
Overview in workflow window.

[1.5.5.3] - 2016-06-30

Fixed

Reitroduced non-null check in FloatMatrixIndexer which avoids some crashes.
Crash in 'Categorical annotation rows' avoided.

[1.5.5.2] - 2016-06-29

Fixed

Critical bug in NGS importer fixed that lead to crashes.
Bug in 'Matching rows by name' fixed that resulted in crashes after applying 'Combine main columns' to one of the input matrices.

[1.5.5.1] - 2016-06-27

Fixed

Changed annotation download link to annotations.perseus-framework.org [Perseus-120].

[1.5.5.0] - 2016-06-16

Added

Feature set corresponds to what is described in the publication Tyanova et al. (2016) Nature Methods, doi:10.1038/nmeth.3901.

perseus/user/change_log.txt · Last modified: 2017/12/12 14:20 by art