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perseus:user:change_log [2017/12/01 12:10]
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perseus:user:change_log [2017/12/12 14:20]
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 ====== Change log ====== ====== Change log ======
  
-  ​* [1.6.0.7] - 2017-07-26 +===== [1.6.1.0] - 2017-12-08 ===== 
-    ​* ​Fixed + 
-      * Enabled saving of large sessions due to changes in the way annotation rows and columns are serialized +==== Added==== 
-      * Fixed a bug in one-sided volcano plot, where processing would never finish. + 
-      * Configuring scatter plot [Perseus-129]. +  ​Specify name for annotation row created from regular expression. 
-      * Resize tables after loading session [Perseus-123]. +  * Cluster constraints added to hierarchical clustering 
-      * Find dialog stays on top [Perseus-125]. +  * Volcano plot: Display group names in x-axis label [[Perseus-156](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-156)] 
-      * Histogram: Change number of bins and select from imputation [Perseus-118]. +  * Session files are not overwritten with a corrupted file if saving session fails [[Perseus-154](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-154)]. 
-      * Fix font-selection [Perseus-122]. +  * Label column in volcano/​scatter plots are now 'Gene Name' by default. Any manual selection will be saved with the session [[Perseus-155](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-155)]. 
-      * Fix bug in annotation creation that made filtering rows crash [Perseus-132]. +  * Readded '​Annotation matrix'​ activity [[Perseus-165](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-165)]. 
-    ​* ​Added +  * 'Raw upload'​ now supports also space-separated files. 
-      * Process text columns now includes an optional replacement string. + 
-      * Report version number of .sps session file on failed load [Perseus-14]. +==== Fixed ==== 
-    ​* ​Changed + 
-      * Volcano Plot: Reordered parameters to be consistent with the interface of the 'Two sample test'. Group 1 is now on the right side of the plot. The x-axis label was adjusted accordingly. +  * Multi-scatter plot: remove dummy button from GUI. Do not limit correlation calculation to visible plots only. No more missing values in correlation column [[Perseus-150](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-150)]. 
-  ​* ​[1.5.8.0] - 2017-03-13 +  * Imputation matrix from not expanded in `Expand multi-numeric and text columns` leading to errors downstream [[Perseus-146](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-146)]. 
-    ​* ​Added +  * Hierarchical Clustering - Image export [[Perseus-144](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-144)]. 
-      * Winforms based GUI. +  * Hierarchical clustering correctly handling duplicate rows in k-means pre-clustering:​ Fixed an error occurring when the total number of rows in the data was larger than k but the unique number of rows was less than k [[Perseus-164](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-164)]. 
-  ​* ​[1.5.6.0] - 2016-10-31 +  * Missing configuration files were re-added to the release. Activity headers will now be ordered as before. 
-    ​* ​Fixed +  * GUI would crash after switching many times between analyses [[Perseus-182](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-182)]. 
-      * Width adjustment - correct behaviour also on very small sample size due to change of definition of quantiles. +  * Fix annotation row copying in '​Matching rows by name' which would lead to errors downstream [[Perseus-179](https://​maxquant.myjetbrains.com/​youtrack/​issue/​Perseus-179)]. 
-    ​* ​Added +  * When using 'Add annotation'​ and 'Back to base identifiers'​ `mainAnnot*` is now again selected by default. 
-      * Numeric venn diagram now also possible on numerical columns. + 
-      * Replace missing from gaussion possible on numerical columns. +===== [1.6.0.7] - 2017-07-26 ​===== 
-      * Overview in workflow window. + 
-  ​* ​[1.5.5.3] - 2016-06-30 +==== Fixed ==== 
-    ​* ​Fixed + 
-      * Reitroduced non-null check in FloatMatrixIndexer which avoids some crashes. +  ​* Enabled saving of large sessions due to changes in the way annotation rows and columns are serialized 
-      * Crash in '​Categorical annotation rows' avoided. +  * Fixed a bug in one-sided volcano plot, where processing would never finish. 
-  ​* ​[1.5.5.2] - 2016-06-29 +  * Configuring scatter plot [Perseus-129]. 
-    ​* ​Fixed +  * Resize tables after loading session [Perseus-123]. 
-      * Critical bug in NGS importer fixed that lead to crashes. +  * Find dialog stays on top [Perseus-125]. 
-      * Bug in '​Matching rows by name' fixed that resulted in crashes after applying '​Combine main columns'​ to one of the input matrices. +  * Histogram: Change number of bins and select from imputation [Perseus-118]. 
-  ​* ​[1.5.5.1] - 2016-06-27 +  * Fix font-selection [Perseus-122]. 
-    ​* ​Fixed +  * Fix bug in annotation creation that made filtering rows crash [Perseus-132]. 
-      * Changed annotation download link to annotations.perseus-framework.org [Perseus-120]. + 
-  ​* ​[1.5.5.0] - 2016-06-16 +==== Added ==== 
-    ​* ​Added + 
-      * Feature set corresponds to what is described in the publication Tyanova et al. (2016) Nature Methods, doi:​10.1038/​nmeth.3901.+  ​* Process text columns now includes an optional replacement string. 
 +  * Report version number of .sps session file on failed load [Perseus-14]. 
 + 
 +==== Changed ​==== 
 + 
 +  ​* Volcano Plot: Reordered parameters to be consistent with the interface of the 'Two sample test'. Group 1 is now on the right side of the plot. The x-axis label was adjusted accordingly. 
 + 
 +===== [1.5.8.0] - 2017-03-13 ​===== 
 + 
 +==== Added ==== 
 + 
 +  ​* Winforms based GUI. 
 + 
 +===== [1.5.6.0] - 2016-10-31 ​===== 
 + 
 +==== Fixed ==== 
 + 
 +  ​* Width adjustment - correct behaviour also on very small sample size due to change of definition of quantiles. 
 + 
 +==== Added ==== 
 + 
 +  ​* Numeric venn diagram now also possible on numerical columns. 
 +  * Replace missing from gaussion possible on numerical columns. 
 +  * Overview in workflow window. 
 + 
 +===== [1.5.5.3] - 2016-06-30 ​===== 
 + 
 +==== Fixed ==== 
 + 
 +  ​* Reitroduced non-null check in FloatMatrixIndexer which avoids some crashes. 
 +  * Crash in '​Categorical annotation rows' avoided. 
 + 
 +===== [1.5.5.2] - 2016-06-29 ​===== 
 + 
 +==== Fixed ==== 
 + 
 +  ​* Critical bug in NGS importer fixed that lead to crashes. 
 +  * Bug in '​Matching rows by name' fixed that resulted in crashes after applying '​Combine main columns'​ to one of the input matrices. 
 + 
 +===== [1.5.5.1] - 2016-06-27 ​===== 
 + 
 +==== Fixed ==== 
 + 
 +  ​* Changed annotation download link to annotations.perseus-framework.org [Perseus-120]. 
 + 
 +===== [1.5.5.0] - 2016-06-16 ​===== 
 + 
 +==== Added ==== 
 + 
 +  ​* Feature set corresponds to what is described in the publication Tyanova et al. (2016) Nature Methods, doi:​10.1038/​nmeth.3901.
  
  
perseus/user/change_log.txt · Last modified: 2017/12/12 14:20 by art