perseus:user:change_log
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| ====== Change log ====== | ====== Change log ====== | ||
| - | * [1.6.0.7] - 2017-07-26 | + | ===== [1.6.1.0] - 2017-12-08 ===== |
| - | * Fixed | + | |
| - | * Enabled saving of large sessions due to changes in the way annotation rows and columns are serialized | + | ==== Added==== |
| - | * Fixed a bug in one-sided volcano plot, where processing would never finish. | + | |
| - | * Configuring scatter plot [Perseus-129]. | + | * Specify name for annotation row created from regular expression. |
| - | * Resize tables after loading session [Perseus-123]. | + | * Cluster constraints added to hierarchical clustering |
| - | * Find dialog stays on top [Perseus-125]. | + | * Volcano plot: Display group names in x-axis label [[Perseus-156](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-156)] |
| - | * Histogram: Change number of bins and select from imputation [Perseus-118]. | + | * Session files are not overwritten with a corrupted file if saving session fails [[Perseus-154](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-154)]. |
| - | * Fix font-selection [Perseus-122]. | + | * Label column in volcano/scatter plots are now 'Gene Name' by default. Any manual selection will be saved with the session [[Perseus-155](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-155)]. |
| - | * Fix bug in annotation creation that made filtering rows crash [Perseus-132]. | + | * Readded 'Annotation matrix' activity [[Perseus-165](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-165)]. |
| - | * Added | + | * 'Raw upload' now supports also space-separated files. |
| - | * Process text columns now includes an optional replacement string. | + | |
| - | * Report version number of .sps session file on failed load [Perseus-14]. | + | ==== Fixed ==== |
| - | * Changed | + | |
| - | * Volcano Plot: Reordered parameters to be consistent with the interface of the 'Two sample test'. Group 1 is now on the right side of the plot. The x-axis label was adjusted accordingly. | + | * Multi-scatter plot: remove dummy button from GUI. Do not limit correlation calculation to visible plots only. No more missing values in correlation column [[Perseus-150](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-150)]. |
| - | * [1.5.8.0] - 2017-03-13 | + | * Imputation matrix from not expanded in `Expand multi-numeric and text columns` leading to errors downstream [[Perseus-146](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-146)]. |
| - | * Added | + | * Hierarchical Clustering - Image export [[Perseus-144](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-144)]. |
| - | * Winforms based GUI. | + | * Hierarchical clustering correctly handling duplicate rows in k-means pre-clustering: Fixed an error occurring when the total number of rows in the data was larger than k but the unique number of rows was less than k [[Perseus-164](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-164)]. |
| - | * [1.5.6.0] - 2016-10-31 | + | * Missing configuration files were re-added to the release. Activity headers will now be ordered as before. |
| - | * Fixed | + | * GUI would crash after switching many times between analyses [[Perseus-182](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-182)]. |
| - | * Width adjustment - correct behaviour also on very small sample size due to change of definition of quantiles. | + | * Fix annotation row copying in 'Matching rows by name' which would lead to errors downstream [[Perseus-179](https://maxquant.myjetbrains.com/youtrack/issue/Perseus-179)]. |
| - | * Added | + | * When using 'Add annotation' and 'Back to base identifiers' `mainAnnot*` is now again selected by default. |
| - | * Numeric venn diagram now also possible on numerical columns. | + | |
| - | * Replace missing from gaussion possible on numerical columns. | + | ===== [1.6.0.7] - 2017-07-26 ===== |
| - | * Overview in workflow window. | + | |
| - | * [1.5.5.3] - 2016-06-30 | + | ==== Fixed ==== |
| - | * Fixed | + | |
| - | * Reitroduced non-null check in FloatMatrixIndexer which avoids some crashes. | + | * Enabled saving of large sessions due to changes in the way annotation rows and columns are serialized |
| - | * Crash in 'Categorical annotation rows' avoided. | + | * Fixed a bug in one-sided volcano plot, where processing would never finish. |
| - | * [1.5.5.2] - 2016-06-29 | + | * Configuring scatter plot [Perseus-129]. |
| - | * Fixed | + | * Resize tables after loading session [Perseus-123]. |
| - | * Critical bug in NGS importer fixed that lead to crashes. | + | * Find dialog stays on top [Perseus-125]. |
| - | * Bug in 'Matching rows by name' fixed that resulted in crashes after applying 'Combine main columns' to one of the input matrices. | + | * Histogram: Change number of bins and select from imputation [Perseus-118]. |
| - | * [1.5.5.1] - 2016-06-27 | + | * Fix font-selection [Perseus-122]. |
| - | * Fixed | + | * Fix bug in annotation creation that made filtering rows crash [Perseus-132]. |
| - | * Changed annotation download link to annotations.perseus-framework.org [Perseus-120]. | + | |
| - | * [1.5.5.0] - 2016-06-16 | + | ==== Added ==== |
| - | * Added | + | |
| - | * Feature set corresponds to what is described in the publication Tyanova et al. (2016) Nature Methods, doi:10.1038/nmeth.3901. | + | * Process text columns now includes an optional replacement string. |
| + | * Report version number of .sps session file on failed load [Perseus-14]. | ||
| + | |||
| + | ==== Changed ==== | ||
| + | |||
| + | * Volcano Plot: Reordered parameters to be consistent with the interface of the 'Two sample test'. Group 1 is now on the right side of the plot. The x-axis label was adjusted accordingly. | ||
| + | |||
| + | ===== [1.5.8.0] - 2017-03-13 ===== | ||
| + | |||
| + | ==== Added ==== | ||
| + | |||
| + | * Winforms based GUI. | ||
| + | |||
| + | ===== [1.5.6.0] - 2016-10-31 ===== | ||
| + | |||
| + | ==== Fixed ==== | ||
| + | |||
| + | * Width adjustment - correct behaviour also on very small sample size due to change of definition of quantiles. | ||
| + | |||
| + | ==== Added ==== | ||
| + | |||
| + | * Numeric venn diagram now also possible on numerical columns. | ||
| + | * Replace missing from gaussion possible on numerical columns. | ||
| + | * Overview in workflow window. | ||
| + | |||
| + | ===== [1.5.5.3] - 2016-06-30 ===== | ||
| + | |||
| + | ==== Fixed ==== | ||
| + | |||
| + | * Reitroduced non-null check in FloatMatrixIndexer which avoids some crashes. | ||
| + | * Crash in 'Categorical annotation rows' avoided. | ||
| + | |||
| + | ===== [1.5.5.2] - 2016-06-29 ===== | ||
| + | |||
| + | ==== Fixed ==== | ||
| + | |||
| + | * Critical bug in NGS importer fixed that lead to crashes. | ||
| + | * Bug in 'Matching rows by name' fixed that resulted in crashes after applying 'Combine main columns' to one of the input matrices. | ||
| + | |||
| + | ===== [1.5.5.1] - 2016-06-27 ===== | ||
| + | |||
| + | ==== Fixed ==== | ||
| + | |||
| + | * Changed annotation download link to annotations.perseus-framework.org [Perseus-120]. | ||
| + | |||
| + | ===== [1.5.5.0] - 2016-06-16 ===== | ||
| + | |||
| + | ==== Added ==== | ||
| + | |||
| + | * Feature set corresponds to what is described in the publication Tyanova et al. (2016) Nature Methods, doi:10.1038/nmeth.3901. | ||
perseus/user/change_log.1512126632.txt.gz · Last modified: 2017/12/01 12:10 by art
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